Anjana Ahuja: Science Notebook
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Itstrickytounderstandthissentenceisntit? If you pluck the punctuation out of a sentence, it becomes much harder to read. Biologists now suspect that some stretches of DNA in the human genome that were previously thought to be useless might serve as punctuation between genes.
Your genome – the genetic material that makes you, you – is made up of genes and so-called junk DNA. Genes are the instruction manuals that your body uses to make proteins. But genes constitute only 4 per cent of the genome. The rest – the junk DNA – appears to serve no useful purpose. In the jargon, it doesn’t code for anything. This is puzzling, because scientists thought that evolution would fine-tune the human genome to preserve the essential bits and discard the rest.
Now an international team of scientists has discovered that junk DNA might regulate the activity of the genes they surround. While genes do the hard work of making proteins, the junk DNA could be responsible for starting and stopping protein production. “Some of the junk DNA might be considered punctuation marks – commas and full stops that help make sense of the coding portion of the genome,” says Dr Victoria Lunyak, of the University of California, San Diego, School of Medicine, one of the authors of a paper published in Science. Another analogy is to think of genes as building labourers, and the surrounding pieces of junk DNA as foremen.
This could explain why gene therapy has had limited success: scientists have tended to transfer genes without the junk DNA. And we know what happens when a foreman doesn’t turn up on a building site: you get the tea-drinking and wolf-whistling, but not much building.
— HOW green is your green? Researchers have suggested that golf courses should be managed as wildlife sanctuaries. Professor Ray Semlitsch, of the University of Miami, notes that just a few changes could turn courses into nature-friendly habitat, particularly for amphibians. His recommendations include buffering ponds from chemical runoff, surrounding wetlands with forest or grass and letting pools dry out over summer, as they would in the natural environment.
— THERE is much speculation about the future of the Commons Select Committee on Science and Technology, now that Gordon Brown has subsumed the Office for Science and Technology into the Department for Innovation, Universities and Skills. There are fears that the committee will be forced to focus more on universities and less on the Government’s use of science in policymaking.
This must not happen. It was this committee that discovered that ID cards would not be fully tested before being implemented. Committees may not stir the soul, but let’s not mistake a tedious cause for a trivial one.
Anjana Ahuja joined The Times in 1994, and writes for times2 and the comment pages. In her Science Notebook she writes about science, medicine and technology, and their impact on society. She holds a PhD in space physics from Imperial College, London. She is currently on maternity leave.
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I enjoyed reading Eric's comment.
The Human Genome Project has just let the genie out of the bottle. I am sure the overlooked 96% of our genome has many surprises stored in it for our inquisitive minds for ages to come.
Was it James Watson or Craig Venter to be the first to have his entire genome sequenced?
Javed Zaman, Dhaka, Bangladesh
It is fascinating to me that semantic nuances are perceived because of the use of a term, "junk DNA," that actually has a particular meaning. Yet the allusion to "junk" evokes emotions in some people despite the neutrailty of the term.
Johnson, USA,
I don't understand why scientists ever thought that there were useless strands of DNA. Nature doesn't have many "useless" things...except maybe positivistic goofball scientists.
lea benson place, Salem, MA USA
"The purpose of DNA is to provide a template for RNA which in turn provides the template for proteins, which is called the 'central dogma of molecular biology'."
That's the purpose of 4% of DNA, not THE purpose of DNA. The arrogance of calling the rest of it "junk DNA" boils down to the arrogance of assuming that the little part that we understand about how it works is the whole picture. My instinct has always been that the "junk DNA" is analogous to computer Code, and the genes analogous to Data. That is, the genes describe the proteins to be manufactured, but the "junk DNA" contains the instructions for when, how much, and under what circumstances to manufacture them.
Erik, Philadelphia, USA
Wow - this one started a lively debate and thank you all for the comments. I used the term 'junk dna' in the same way that biologists do - i.e. to describe stretches of the genome that don't code for proteins. Of course, as several of you spotted, that doesn't automatically mean they are totally useless.
I think this is a particularly exciting field to watch - many biologists feel that those portions must have a function, and I wouldn't be surprised if there's a bit of race to discover it. I'll be keeping an eye on it.
anjana ahuja, london, uk
"Steve isn't saying that the article's author made up the term "junk DNA". He's proposing that it's possible that we may find somewhere down the road that junk DNA might actually do something beyond serving as commas". -- John, Berkeley, CA USA
I do apologize if that wasn't his intent, however, what gave me the idea was his last statement, which i'll quote:
"I live in the hope that this sobriquet has currency only in the heads of those that report science, not those who practise it." -- Steve, Wiltshire
'sobriquet' meaning 'humorous nickname'
Mohammed, London, UK
The term 'Junk' DNA is widely used by scientists (I am one) and textbooks. It does not mean that it is useless but rather that it does not code for anything, ie. proteins. The purpose of DNA is to provide a template for RNA which in turn provides the template for proteins, which is called the 'central dogma of molecular biology'. Some of this junk DNA is probably useless and is a relic from evolution but a number of theories have been suggested as to what useful functions some of the junk DNA has, such as that mentioned in the article. The fun part of science is that we are always searching and we don't have all the answers. That leads us to explore the possibilities.
Neil Pickles, Wirral, England
Mohammed:
Steve isn't saying that the article's author made up the term "junk DNA". He's proposing that it's possible that we may find somewhere down the road that junk DNA might actually do something beyond serving as commas.
John, Berkeley, CA USA
I am not a scientist, nor am I particularly intellectual......
However I am tempted to suggest that some of
the scientists who are trying to decipher the Human
Genome must be a bit dumb to think that because they
don't understand so called "junk dna", then it must be
unimportant..........are we also to believe that Dark Energy,
which makes up most of Universe is also unimportant.....
Badeye, Sydney,
It is thought provoking to consider that scientists are manipulating genetics and assuring us of the safety of so doing while still being unable to actually read the DNA itself, let alone the sub DNA genetics that aren't yet undestood at all.
Mike Poulsen, Reading, Berkshire
Steve,
I don't think Anjana just made up that term for this story. It is documented in every encyclopedia/dictionary.
The noun 'junk DNA' has one meaning:
Meaning #1: stretches of DNA that do not code for genes
Great article and excellent analogy were used. It'll take hundreds of years before we reasonably understand the 'human genome'.
Mohammed, London, UK
On the other hand, 96% commas seems a lot. That would be 2784 commas in the preceding sentence alone!
Jack Thursby, Sheffield,
I'm with Steve, I always thought 'junk' was scientific code for 'we don't know what it does'
Susan, Barry, S Wales
As a consulting engineer who has to deal with things I don't properly understand everyday, it has always struck me as very un-scientific to talk about junk DNA.
DNA was discovered when I was a boy in short trousers (literally) and for something that is as complex as it is, it is obvious that it will take many decades, if not centuries for every last nuance to be understood.
To claim, a mere 50 years after its discovery, that vaste swathes are 'Junk' simply because their function is neither known nor understood, is surely arrogance of the very worst sort.
I live in the hope that this sobriquet has currency only in the heads of those that report science, not those who practise it.
Steve, Wiltshire,